Author: LIBD rstats club

By Sang Ho Kwon. Recent advancements in spatially-resolved transcriptomics (SRT) technologies have ushered in a new era of possibilities for biological research. These technologies offer the unique ability to map...continue reading.

By Nick Eagles Over the past few years, I’ve had the opportunity to work with a lot of whole-genome bisulfite-sequencing (WGBS) datasets. They provide a powerful opportunity to look at...continue reading.

By Nick Eagles We’ve recently been interested in exploring the (largely python-based) tools others have published to process spatial transcriptomics data for various end goals. A common goal is to...continue reading.

By Arta Seyedian Link to Kaggle Page Link to GitHub Source Around the end of October 2020, I attended the Open Data Science Conference primarily for the workshops and training...continue reading.

By Brenda Pardo A month ago, I started an enriching adventure by joining Leonardo Collado-Torres’ team at Lieber Institute for Brain Development. Since then, I have been working on modifying...continue reading.

By Nick Eagles As part of recent LIBD work with spatial gene expression, I recently was recommended the tool Space Ranger, which provides software pipelines walking Visium spatial RNA-seq samples...continue reading.

This article is originally published at http://LieberInstitute.github.io/rstatsclub/ Thanks for visiting r-craft.org This article is originally published at http://LieberInstitute.github.io/rstatsclub/ Please visit source website for post related comments.continue reading.

HAPPY HOLIDAYS!!!?⛄??❄ In the spirit of the coming new year and new beginnings, we created a tutorial for getting started or restarted with R. If you are new to R...continue reading.

By Amy Peterson Studying genetic differential expression using postmortem human brain tissue requires an understanding of the effect brain tissue degradation has on genetic expression. Particularly when brain tissue degradation...continue reading.

Every six months the Bioconductor project releases it’s new version of packages. This allows developers a time window to try out new methods and test them rigorously before releasing them...continue reading.

To carry on our momentum from a few weeks ago from our useR!2018 remote notes blog post, this time we will be summarizing the Demystifying Data Sience 2018 conference for...continue reading.

For our club meeting today we were going to summarize the Demystifying Data Science conference but we forgot that the videos are not released yet. Oops, we’ll have to postpone...continue reading.

For our July 13th 2018 LIBD rstats club meeting we decided to check as much as we could the useR!2018 conference. Here’s what we were able to figure out about...continue reading.

By Amy Peterson Using Git Git is a version control system that allows you to track changes made to files while working on a project, either independently or in collaboration...continue reading.

By Steve Semick. What do you do when you want to use results from the literature to anchor your own analysis? When these results are in the form of an...continue reading.

By L. Collado-Torres. For the past 6-7 years I have been using TextMate 2 as my text editor which I’ve found useful for R code, bash, Markdown, etc. You could...continue reading.

By L. Collado-Torres. If you are working at LIBD or with large data, it’s very likely that it won’t fit in your laptop and that you’ll be using the terminal...continue reading.

In this blog post Leonardo Collado-Torres explains how to contribute posts to the LIBD rstats club. While some parameters are specific to this blog, you could also use this for...continue reading.

Welcome to the LIBD rstats club! A few months ago Carrie Wright and Leonardo Collado-Torres started an R + Journal club where we have been meeting every other week to...continue reading.

This is a test post for checking the formatting of the website. You can basically ignore the rest. It’s showing the contents of the post.md archetype (blog post template). Useful...continue reading.