Author: L. Collado-Torres

Is your tissue larger than a @10xGenomics Visium capture area? If you need to stitch together the images but also the gene expression data, check our new preprint describing #visiumStitchedWe...continue reading.

I recently gave a remote seminar presentation for the Applications of Genomics 2024-2025 course organized by Esperanza Martínez Romero and Alejandra Zayas Del Moral. The idea was to talk about...continue reading.

So excited to share a new preprint 🎉📄 for a transcriptomic study at @LieberInstitute where we compared the effects of cigarette smoke 🚬 vs. nicotine 💉 exposure on the developing...continue reading.

I enjoyed presenting our deconvolution benchmark study for the #SingleCell genomics webinar series for Latin America organized with @eventsWCS support📜 https://t.co/hUW5cz3ubm led by @lahuuki & https://t.co/jXHOzyOrf8Slides by @lahuuki + minor...continue reading.

Is your tissue larger than a @10xGenomics Visium capture area? If you need to stitch together the images but also the gene expression data, check our new preprint describing #visiumStitchedWe...continue reading.

This article is originally published at https://lcolladotor.github.io/ Thanks for visiting r-craft.org This article is originally published at https://lcolladotor.github.io/ Please visit source website for post related comments.continue reading.

This article is originally published at https://lcolladotor.github.io/ Thanks for visiting r-craft.org This article is originally published at https://lcolladotor.github.io/ Please visit source website for post related comments.continue reading.

💡Daskalakis & Ressler labs @McLeanHospital @harvardmed are extremely excited & proud 🥳to share that our collaborative work with Nemeroff @UTAustin and Kleinman @LieberInstitute labs on molecular underpinnings of #PTSD &...continue reading.

New in @sciencemagazine: our work from @LieberInstitute #spatialDLPFC applies #snRNAseq and #Visium spatial transcriptomic in the DLPFC to better understand anatomical structure and cellular populations in the human brain #PsychENCODE...continue reading.

A few years ago now (2021) we published a study we refer to with a very generic name: HumanPilot (Maynard, Collado-Torres, Weber, Uytingco et al., 2021). In this peer-reviewed study,...continue reading.

This article is originally published at https://lcolladotor.github.io/ Thanks for visiting r-craft.org This article is originally published at https://lcolladotor.github.io/ Please visit source website for post related comments.continue reading.

This article is originally published at https://lcolladotor.github.io/ Thanks for visiting r-craft.org This article is originally published at https://lcolladotor.github.io/ Please visit source website for post related comments.continue reading.

1/🎉Ecstatic the lute software preprint with my mentor @stephaniehicks deconvolving sn & bulk #rnaseq of human brain is now on #bioRxiv! Thankful to @jhubiostat,@LieberInstitute, and my brilliant colleagues @lahuuki @sanghokwon17...continue reading.

I’m excited to share our first human habenula study comparing transcriptomic data from neurotypical control postmortem tissue and schizophrenia cases! 🧠 #HabenulaLIBD #snRNAseq #Habenula This is my first paper as...continue reading.

Thanks @kenzhou86 & Margaret Taub for inviting to present at the Current Topics in Biostatistics seminarIt was fun reminiscing about the past & sharing my experience. Got them to laugh...continue reading.

Hey #deconvolution fans! 👀 We’ve got an exciting new pre-print for you: a benchmark of 6 popular deconvolution methods on a multimodal human brain #DLPFC dataset 🧠🧬 @LieberInstitute @jhubiostat #scitwitter...continue reading.

Very happy to share our preprint on spatially-resolved transcriptomics and single-nucleus RNA-sequencing in the human locus coeruleus! 🎉🧠🔵 https://t.co/L69G2P9PO6— Lukas Weber (@lmwebr) October 31, 2022continue reading.

The final part of my thesis work is out! Never did I think I’d end my thesis by doing anything computational, especially RNA-sequencing, but here we are! Couldn’t have done...continue reading.

You can now read my first preprint as a @jhubiostat postdoc, in collaboration with @LieberInstitute — a commentary on #transcriptomics #deconvolution challenges & opportunities for heterogeneous tissues! A tweetorial… 1/...continue reading.

🚨new preprint alert 🚨⭐️escheR: Unified multi-dimensional visualizations with Gestalt principles⭐️⁰🖨️: https://t.co/83VoUY42apWe introduce Gestalt principles to optimize spatial visualizations, specifically joint visualization of multi-dimensional data….continue reading.