R Weekly 2023-W40 zoomerjoin, typewriter-style plots, system dependencies

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Hello and welcome to this new issue!

• How to have (my) content shared by R Weekly?

This week’s release was curated by Ryo Nakagawara, with help from the R Weekly team members and contributors.

Highlight

• {zoomerjoin} 0.1.0: Superlatively-fast fuzzy-joins in R.
• Creating typewriter-styled maps in {ggplot2}
• System Dependencies in R Packages & Automatic Testing

Insights

• Empowering Healthcare with R: Javier Orraca-Deatcu’s Journey from Finance to Predictive Health Models

• System Dependencies in R Packages & Automatic Testing

• Insights from Posit::conf(2023)

• shinylive GICS Tree

R in the Real World

• The Super League: Tournament Blood Bowl online

• The UN’s proposed Multidimensional Vulnerability Index

R in Academia

• The R Journal: Volum 15/1

Resources

• Plaintext back-up of r-devel and r-package-devel archives

New Packages

📦 Go Live for More New Pkgs 📦

CRAN

• {tramicp} 0.0-1: Model-Based Causal Feature Selection for General Response Types
• {regcensus} 1.0.0: Accessing Data from the ‘RegCensusAPI’
• {plgraphics} 1.2: User Oriented Plotting Functions
• {hydroloom} 1.0.0: Utilities to Weave Hydrologic Fabrics
• {CustomDerivative} 0.1.0: Pricing Various Types of Custom Derivatives
• {phytoclass} 1.0.0: Estimate Chla Biomass of Phytoplankton Groups
• {h3r} 0.1.0: Hexagonal Hierarchical Geospatial Indexing System
• {papaja} 0.1.2: Prepare American Psychological Association Journal Articles with R Markdown
• {viraldomain} 0.0.1: Applicability Domain Methods of Viral Load and CD4 Lymphocytes
• {Colossus} 0.9.3: Risk Model Regression and Analysis with Complex Non-Linear Models
• {Rpdb} 2.3.4: Read, Write, Visualize and Manipulate PDB Files
• {RaschSampler} 0.8-10: Rasch Sampler
• {dwdradar} 0.2.10: Read Binary Radar Files from ‘DWD’ (German Weather Service)
• {adestr} 0.5.0: Estimation in Optimal Adaptive Two-Stage Designs
• {qwalkr} 0.1.0: Handle Continuous-Time Quantum Walks with R
• {nolock} 1.0.4: Append ‘WITH (NOLOCK)’ to ‘SQL’ Queries
• {emuR} 2.4.1: Main Package of the EMU Speech Database Management System
• {anomalize} 0.2.4: Tidy Anomaly Detection
• {ExtremalDep} 0.0.4-1: Extremal Dependence Models
• {hydflood} 0.5.6: Flood Extents and Durations along the Rivers Elbe and Rhine
• {highlighter} 0.1: Code Syntax Highlighting using the ‘Prism.js’ Library Ex-Gaussian Estimation
• {NTS} 1.1.3: Nonlinear Time Series Analysis
• {changepoint.geo} 1.0.2: Geometrically Inspired Multivariate Changepoint Detection
• {SNSFdatasets} 0.1.0: Download Datasets from the Swiss National Science Foundation (SNF, FNS, SNSF)
• {occumb} 1.0.1: Site Occupancy Modeling for Environmental DNA Metabarcoding
• {MGPSDK} 1.0.0: Interact with the Maxar ‘MGP’ Application Programming Interfaces
• {LAIr} 0.1.0: Converting NDVI to LAI of Field, Proximal and Satellite Data
• {JointFPM} 1.0.0: A Parametric Model for Estimating the Mean Number of Events
• {cookiemonster} 0.0.1: Your Friendly Solution to Managing Browser Cookies
• {Rpadrino} 0.0.5: Interact with the ‘PADRINO’ IPM Database
• {RWgraph} 1.0.0: Random Walks on Graphs Representing a Transactional Network
• {modelbpp} 0.1.2: Model BIC Posterior Probability
• {chem.databases} 1.0.0: Collection of 3 Chemical Databases from Public Sources
• {allometric} 1.4.1: Structured Allometric Models for Trees

GitHub or Bitbucket

• quart_borg slide theme: Mork Borg-inspired slide theme for Quarto/Reveal.js slides.

• {savvy}: An unfriendly R extension interface using Rust.
• {zoomerjoin} 0.1.0: Superlatively-fast fuzzy-joins in R.
• {c64vice} 0.1.0: Command a running VICE c64 emulator instance from R.

Updated Packages

🔍 Search on R-universe 🔍

• {import} 1.3.1: An Import Mechanism for R.
• {nestedmodels} 1.1.0: Tidy Modelling for Nested Data - diffify
• {timsac} 1.3.8-4: Time Series Analysis and Control Package - diffify
• {lambdr} 1.2.4: Create a Runtime for Serving Containerised R Functions on ‘AWS Lambda’ - diffify
• {birdring} 1.5: Methods to Analyse Ring Re-Encounter Data - diffify
• {treemapify} 2.5.6: Draw Treemaps in ‘ggplot2’ - diffify
• {reporter} 1.4.2: Creates Statistical Reports - diffify
• {markdown} 1.9: Render Markdown with ‘commonmark’ - diffify
• {alakazam} 1.3.0: Immunoglobulin Clonal Lineage and Diversity Analysis - diffify
• {weyl} 0.0-4: The Weyl Algebra - diffify
• {crosstalkr} 1.0.4: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks - diffify
• {tinytex} 0.47: Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents - diffify
• {soundgen} 2.6.1: Sound Synthesis and Acoustic Analysis - diffify
• {logitr} 1.1.1: Logit Models w/Preference & WTP Space Utility Parameterizations - diffify
• {GET} 0.5: Global Envelopes - diffify
• {billboarder} 0.4.1: Create Interactive Chart with the JavaScript ‘Billboard’ Library - diffify
• {sMSROC} 0.1.1: Assessment of Diagnostic and Prognostic Markers - diffify
• {pirouette} 1.6.8: Create a Bayesian Posterior from a Phylogeny - diffify
• {ftExtra} 0.6.1: Extensions for ‘Flextable’ - diffify
• {pald} 0.0.3: Partitioned Local Depth for Community Structure in Data - diffify
• {makePalette} 0.1.2: Make Palette - diffify
• {tensorflow} 2.14.0: R Interface to ‘TensorFlow’ - diffify
• {wikiprofiler} 0.1.3: ‘WikiPathway’ Based Data Integration and Visualization - diffify
• {nutrition} 1.1.0: Useful Functions for People on a Diet - diffify
• {learnr} 0.11.5: Interactive Tutorials for R - diffify
• {mlflow} 2.7.1: Interface to ‘MLflow’ - diffify
• {metafor} 4.4-0: Meta-Analysis Package for R - diffify
• {coin} 1.4-3: Conditional Inference Procedures in a Permutation Test Framework - diffify
• {bruceR} 2023.9: Broadly Useful Convenient and Efficient R Functions - diffify
• {pirouette} 1.6.8: Create a Bayesian Posterior from a Phylogeny - diffify
• {optimizeR} 0.3.3: Unified Framework for Numerical Optimizers - diffify
• {lubridate} 1.9.3: Make Dealing with Dates a Little Easier - diffify
• {icecream} 0.2.1: Print Debugging Made Sweeter - diffify
• {codecountR} 0.0.3.1: Counting Codes in a Text and Preparing Data for Analysis - diffify
• {activity} 1.3.4: Animal Activity Statistics - diffify
• {robustHD} 0.8.0: Robust Methods for High-Dimensional Data - diffify
• {dbplyr} 2.3.4: A ‘dplyr’ Back End for Databases - diffify
• {virtualspecies} 1.6: Generation of Virtual Species Distributions - diffify
• {tidycensus} 1.5: Load US Census Boundary and Attribute Data as ‘tidyverse’ and ‘sf’-Ready Data Frames - diffify
• {mockery} 0.4.4: Mocking Library for R - diffify
• {mlpack} 4.2.1: ‘Rcpp’ Integration for the ‘mlpack’ Library - diffify
• {colouR} 0.1.1: Create Colour Palettes from Images - diffify
• {bulkreadr} 1.0.0: The Ultimate Tool for Reading Data in Bulk - diffify
• {withr} 2.5.1: Run Code ‘With’ Temporarily Modified Global State - diffify
• {nanonext} 0.10.2: NNG (Nanomsg Next Gen) Lightweight Messaging Library - diffify
• {gert} 2.0.0: Simple Git Client for R - diffify
• {BAwiR} 1.3: Analysis of Basketball Data - diffify
• {tesseract} 5.2.0: Open Source OCR Engine - diffify
• {psych} 2.3.9: Procedures for Psychological, Psychometric, and Personality Research - diffify
• {ssh} 0.9.0: Secure Shell (SSH) Client for R - diffify
• {rsvg} 2.5.0: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or Bitmap Arrays - diffify
• {protolite} 2.3.0: Highly Optimized Protocol Buffer Serializers - diffify
• {magick} 2.8.0: Advanced Graphics and Image-Processing in R - diffify
• {av} 0.8.5: Working with Audio and Video in R - diffify
• {autostsm} 3.1.2: Automatic Structural Time Series Models - diffify
• {pgmm} 1.2.7: Parsimonious Gaussian Mixture Models - diffify
• {pdftools} 3.4.0: Text Extraction, Rendering and Converting of PDF Documents - diffify
• {openssl} 2.1.1: Toolkit for Encryption, Signatures and Certificates Based on OpenSSL - diffify
• {tidyclust} 0.2.0: A Common API to Clustering - diffify
• {opencv} 0.3.0: Bindings to ‘OpenCV’ Computer Vision Library - diffify

Videos and Podcasts

• Listen to the R-Weekly Highlights Podcast

• Bootstrap confidence intervals for how often Roy Kent says “F*CK”

• R Packages - Feeling a little Testy: TidyX Episode 159

Gist & Cookbook

• Monthly analysis of PCE Inflation

Tutorials

• Creating contiguity and weight matrices in R using a {spdep} approach

• Using dqrng as user-supplied RNG

• Creating a nice looking Table 1 with standardized mean differences

• 3 R functions that I enjoy

• Creating typewriter-styled maps in {ggplot2}

• adaR: An accurate, fast and WHATWG-compliant URL parser

R Project Updates

Updates from R Core:

Upcoming Events in 3 Months

Events in 3 Months:

• A list of R conferences and meetings

• This week’s local R-User and applied stats events

• Weekly R Workshops for Ukraine

Jobs

💼 Explore Jobs & Gigs Board on RStudio Community 💼

• Statistician in psychiatric epidemiology - Uppsala University

Quotes of the Week

Lighthouses of the United Kingdom. I rather like how this turned out. And it didn't take 42 hours. 😅 #rayshader adventures, an #rstats tale pic.twitter.com/jEnHHFJ8W0

— tterence on bsky (@researchremora) September 26, 2023

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