R Weekly 2023-W38 rio 1.0.0, Yihui’s interview, Open Source in Pharma
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Hello and welcome to this new issue!
This week’s release was curated by Sam Parmar, with help from the R Weekly team members and contributors.
Highlight
Insights
R in the Real World
Crossing Bridges: Reporting on NYC taxi data with RStudio and Databricks
A Tale of Outage and Revival: Building a Static Site Generator in R
Utilizing R for Reproducible Open Science Research in Tucson, Arizona
First Publicly Available R-Based Submission Package Submitted to FDA (Pilot 3)
How Open Source (R and Shiny) Is Transforming Processes in the Pharmaceutical Industry
Exploring Machine Learning-Derived Data in Life Sciences with Shiny Applications
R in Organizations
Resources
New Packages
CRAN
- {ggRtsy} 0.1.0: Add Some Van Gogh Colors and Overlay Colors on Your ‘ggplot()’
- {datasetjson} 0.0.1: Read and Write CDISC Dataset JSON Files
- {clustlearn} 1.0.0: Learn Clustering Techniques Through Examples and Code
- {xportr} 0.3.1: Utilities to Output CDISC SDTM/ADaM XPT Files
- {rsleep} 1.0.9: Analysis of Sleep Data
- {biosampleR} 1.0.4: Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
- {ura} 1.0.0: Monitoring Rater Reliability
- {tfrmtbuilder} 0.0.4: ‘shiny’ App Companion to the ‘tfrmt’ Package
- {PSDistr} 0.0.1: Distributions Derived from Normal Distribution
- {qualpalr} 0.4.4: Automatic Generation of Qualitative Color Palettes
- {mapmisc} 2.0.0: Utilities for Producing Maps
- {hwwntest} 1.3.2: Tests of White Noise using Wavelets
- {mand} 2.0: Multivariate Analysis for Neuroimaging Data
- {voiceR} 0.1.0: Voice Analytics for Social Scientists
- {RColorConesa} 1.0.0: Conesa Colors Palette
- {CohortExplorer} 0.0.17: Explorer of Profiles of Patients in a Cohort
- {checkthat} 0.1.0: Intuitive Unit Testing Tools for Data Manipulation
- {teal.code} 0.4.1: Code Storage and Execution Class for ‘teal’ Applications
- {epiCleanr} 0.1.0: A Tidy Solution for Epidemiological Data
- {censobr} 0.1.1: Download Data from Brazil’s Population Census
- {raqs} 1.0.0: Interface to the US EPA Air Quality System (AQS) API
- {teal.reporter} 0.2.1: Reporting Tools for ‘shiny’ Modules
- {teal.logger} 0.1.3: Logging Setup for the ‘teal’ Family of Packages
- {cookiecutter} 0.1.0: Generate Project Files from a Template
- {daiR} 0.9.9: Interface with Google Cloud Document AI API
Updated Packages
- {leafem} 0.2.3: ‘leaflet’ Extensions for ‘mapview’ - diffify
- {ctrdata} 1.15.2: Retrieve and Analyze Clinical Trials in Public Registers - diffify
- {nodbi} 0.9.7: ‘NoSQL’ Database Connector - diffify
- {kutils} 1.73: Project Management Tools - diffify
- {rcompanion} 2.4.34: Functions to Support Extension Education Program Evaluation - diffify
- {S7} 0.1.1: An Object Oriented System Meant to Become a Successor to S3 and S4 - diffify
- {duckplyr} 0.2.1: A ‘DuckDB’-Backed Version of ‘dplyr’ - diffify
- {atable} 0.1.14: Create Tables for Reporting Clinical Trials - diffify
- {gnm} 1.1-5: Generalized Nonlinear Models - diffify
- {planr} 0.1.1: Tools for Supply Chain Management, Demand and Supply Planning - diffify
- {gtExtras} 0.5.0: Extending ‘gt’ for Beautiful HTML Tables - diffify
- {bulkreadr} 0.2.0: The Ultimate Tool for Reading Data in Bulk - diffify
- {GeoAdjust} 2.0.0: Accounting for Random Displacements of True GPS Coordinates of Data - diffify
- {tablet} 0.6.3: Tabulate Descriptive Statistics in Multiple Formats - diffify
- {eyetrackingR} 0.2.1: Eye-Tracking Data Analysis - diffify
- {SiMRiv} 1.0.6: Simulating Multistate Movements in River/Heterogeneous Landscapes - diffify
- {ggfun} 0.1.3: Miscellaneous Functions for ‘ggplot2’ - diffify
- {unicol} 0.2.0: The Colors of your University - diffify
- {rio} 1.0.0: A Swiss-Army Knife for Data I/O - diffify
- {rtrek} 0.4.0: Data Analysis Relating to Star Trek - diffify
- {YTAnalytics} 0.1.0: Wrapper for ‘YouTube Analytics’ API - diffify
- {flattabler} 2.1.0: Obtaining a Flat Table from Pivot Tables - diffify
- {rworkflows} 0.99.13: Test, Document, Containerise, and Deploy R Packages - diffify
- {memoiR} 1.2-4: R Markdown and Bookdown Templates to Publish Documents - diffify
- {admiralonco} 0.5.0: Oncology Extension Package for ADaM in ‘R’ Asset Library - diffify
- {deepRstudio} 0.0.9: Seamless Language Translation in ‘RStudio’ using ‘DeepL’ API and ‘Rstudioapi’ - diffify
- {cognitoR} 1.0.4: Authentication for ‘Shiny’ Apps with ‘Amazon Cognito’ - diffify
- {worcs} 0.1.12: Workflow for Open Reproducible Code in Science - diffify
- {KeyboardSimulator} 2.6.2: Keyboard and Mouse Input Simulation for Windows OS - diffify
- {charlatan} 0.5.1: Make Fake Data - diffify
- {this.path} 2.1.0: Get Executing Script’s Path - diffify
- {redcapAPI} 2.8.0: Interface to ‘REDCap’ - diffify
- {QuickJSR} 1.0.6: Interface for the ‘QuickJS’ Lightweight ‘JavaScript’ Engine - diffify
- {tmap} 3.3-4: Thematic Maps - diffify
- {chatAI4R} 0.2.10: Chat-Based Interactive Artificial Intelligence for R - diffify
- {statsExpressions} 1.5.2: Tidy Dataframes and Expressions with Statistical Details - diffify
Videos and Podcasts
R-Ladies STL: Project Oriented Workflows with Shannon Pileggi (Sep 11 2023)
Generative AI for R progammers - ChatGPT, gptstudio, DALL-E, Whisper, and GitHub Copilot!
Michael Lopez at NFL - Being forward-thinking & anticipating questions - Data Science Hangout
Hadley Wickham at Posit - Giving benefit to people using what you build - Data Science Hangout
R Internationally
Tutorials
Reproducible data science with Nix, part 5 – Reproducible literate programming with Nix and Quarto
Exploring the Third Dimension with R: A Guide to the persp() Function
R Project Updates
Updates from R Core:
Upcoming Events in 3 Months
Events in 3 Months:
Jobs
💼 Explore Jobs & Gigs Board on RStudio Community 💼
rtistry
River basins of France. High-quality render coming soon!
— terence t (@researchremora) September 15, 2023
Made possible by @milos_agathon; inspired by @PythonMaps.#rayshader adventures, an #rstats tale pic.twitter.com/gCxeUemsRm
I recently read a blog post (https://t.co/sgikbBBEjS) from @infowetrust about creating maps using a typewriter, and wanted to see if {ggplot2} could do something similar.
— Nicola Rennie | @[email protected] (@nrennie35) September 15, 2023
So here's an elevation map of Scotland - using only the letters l, I, H, and M!#RStats #RSpatial #DataViz pic.twitter.com/RqzUgywn9O
Fly over a pretty mountain drive. #rayshader adventures, an #rstats tale pic.twitter.com/pJ4dTaYJdr
— Art Steinmetz (@adababbage) September 14, 2023
Quotes of the Week
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