How to remove all user installed packages in R
This article is originally published at http://www.theanalyticslab.nl
A little while ago I ran into an issue with R and RStudio. In order to solve this issue I saw myself forced to remove all user installed packages. For a lot of practical reasons it was not an option for me to simply uninstall R and start with a clean slate and a new installation of R.
Therefore I had to find another solution which could help me with removing all user installed packages. I found a few useful tips and tricks, but nothing that immediately did the job for me. That’s why I’ve decided to share my solution, I hope this can help you in the hour of need.
Here is the script I’ve created in order to remove all user installed packages, without removing any base packages for R or MRO.
# create a list of all installed packages ip <- as.data.frame(installed.packages()) head(ip)
# if you use MRO, make sure that no packages in this library will be removed ip <- subset(ip, !grepl("MRO", ip$LibPath))
# we don't want to remove base or recommended packages either\ ip <- ip[!(ip[,"Priority"] %in% c("base", "recommended")),]
# determine the library where the packages are installed path.lib <- unique(ip$LibPath)
# create a vector with all the names of the packages you want to remove pkgs.to.remove <- ip[,1] head(pkgs.to.remove)
# remove the packages sapply(pkgs.to.remove, remove.packages, lib = path.lib)
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