A {swiftr} Brief Interlude While Awaiting {cdcfluview} CRAN Checks
This article is originally published at https://rud.is/b
My {cdcfluview} package started tossing erros on CRAN just over a week ago when the CDC added an extra parameter to one of the hidden API endpoints that the package wraps. After a fairly hectic set of days since said NOTE came, I had time this morning to poke at a fix. There are alot of tests, so after successful debugging session I was awaiting CRAN checks on various remotes as well as README builds and figured I’d keep up some practice with another, nascent, package of mine, {swiftr}, which makes it dead simple to build R functions from Swift code, in similar fashion to what Rcpp::cppFunction() does for C/C++ code.
macOS comes with a full set of machine learning/AI libraries/frameworks that definitely have “batteries included” (i.e. you can almost just make one function call to get 90-95% what you want without even training new models). One of which is text extraction from Apple’s computer Vision framework. I thought it’d be a fun and quick “wait mode” distraction to wrap the VNRecognizeTextRequest() function and use it from R.
To show how capable the default model is, I pulled a semi-complex random image from DDG’s image search:
Let’s build the function (you need to be on macOS for this; exposition inine):
library(swiftr) # github.com/hrbrmstr/swiftr
swift_function(
code = '
import Foundation
import CoreImage
import Cocoa
import Vision
@_cdecl ("detect_text")
public func detect_text(path: SEXP) -> SEXP {
// turn R string into Swift String so we can use it
let fileName = String(cString: R_CHAR(STRING_ELT(path, 0)))
var res: String = ""
var out: SEXP = R_NilValue
// get image into the right format
if let ciImage = CIImage(contentsOf: URL(fileURLWithPath:fileName)) {
let context = CIContext(options: nil)
if let img = context.createCGImage(ciImage, from: ciImage.extent) {
// setup comptuer vision request
let requestHandler = VNImageRequestHandler(cgImage: img)
// start recognition
let request = VNRecognizeTextRequest()
do {
try requestHandler.perform([request])
// if we have results
if let observations = request.results as? [VNRecognizedTextObservation] {
// paste them together
let recognizedStrings = observations.compactMap { observation in
observation.topCandidates(1).first?.string
}
res = recognizedStrings.joined(separator: "\\n")
}
} catch {
debugPrint("\\(error)")
}
}
}
res.withCString { cstr in out = Rf_mkString(cstr) }
return(out)
}
')
The detect_text() is now available in R, so let’s see how it performs on that image of signs:
detect_text(path.expand("~/Data/signs.jpeg")) %>%
stringi::stri_split_lines() %>%
unlist()
## [1] "BEWILDERED" "UNCLEAR" "nAZEU" "UNCERTAIN" "VISA" "INSURE"
## [7] "ATED" "MUDDLED" "LOsT" "DISTRACTED" "PERPLEXED" "CONFUSED"
## [13] "PUZZLED"
It works super-fast and gets far more correct than I would have expected.
Toy examples aside, it also works pretty well (as one would expect) on “real” text images, such as this example from the Tesseract test suite:
detect_text(path.expand("~/Data/tesseract/news.3B/0/8200_006.3B.tif")) %>%
stringi::stri_split_lines() %>%
unlist()
## [1] "Tobacco chiefs still refuse to see the truth abou"
## [2] "even of America's least conscionable"
## [3] "The tobacco industry would like to promote"
## [4] "men sat together in Washington last"
## [5] "under the conditions they are used.'"
## [6] "week to do what they do best: blow"
## [7] "the specter of prohibition."
## [8] "panel\" of toxicologists as \"not hazardous"
## [9] "smoke at the truth about cigarettes."
## [10] "'If cigarettes are too dangerous to be sold,"
## [11] "then ban them. Some smokers will obey the"
## [12] "People not paid by the tobacco companies"
## [13] "aren't so sure. The list includes several"
## [14] "The CEOs of the nation's largest tobacco"
## [15] "firms told congressional panel that nicotine"
## [16] "law, but many will not. People will be selling"
## [17] "iS not addictive, that they are unconvinced"
## [18] "cigarettes out of the trunks of cars, cigarettes"
## [19] "substances the government does not allow in"
## [20] "foods or classifies as potentially toxic. They"
## [21] "that smoking causes lung cancer or any other"
## [22] "made by who knows who, made of who knows include ammonia, a pesticide called"
## [23] "illness, and that smoking is no more harmful"
## [24] "what,\" said James Johnston of R.J. Reynolds."
## [25] "than drinking coffee or eating Twinkies."
## [26] "It's a ruse. He knows cigarettes are not"
## [27] "methoprene, and ethyl furoate, which has"
## [28] "They said these things with straight taces."
## [29] "going to be banned, at leasi not in his lifetime."
## [30] "caused liver damage in rats."
## [31] "The list \"begs a number of important"
## [32] "They said them in the face of massive"
## [33] "STEVE WILSON"
## [34] "What he really fears are new taxes, stronger"
## [35] "questions about the safety of these additives,\""
## [36] "scientific evidence that smoking is responsible"
## [37] "anti-smoking campaigns, further smoking"
## [38] "said a joint statement from the American"
## [39] "for more than 400,000 deaths every year."
## [40] "restrictions, limits on secondhand smoke and"
## [41] "Rep. Henry Waxman, D-Calif., put that"
## [42] "Republic Columnist"
## [43] "Lung, Cancer and Heart associations. The"
## [44] "limits on tar and nicotine."
## [45] "statement added that substances safe to eat"
## [46] "frightful statistic another way:"
## [47] "Collectively, these steps can accelerate the"
## [48] "\"Imagine our nation's outrage if two fully"
## [49] "He and the others played dumb for the"
## [50] "current 5 percent annual decline in cigarette"
## [51] "aren't necessarily safe to inhale."
## [52] "The 50-page list can be obtained free by"
## [53] "loaded jumbo jets crashed each day, killing all"
## [54] "entire six hours, but really didn't matter."
## [55] "use and turn the tobacco business from highly"
## [56] "calling 1-800-852-8749."
## [57] "aboard. That's the same number of Americans"
## [58] "The game i nearly over, and the tobacco"
## [59] "profitable to depressed."
## [60] "Johnson's comment about cigarettes \"made"
## [61] "Here are just the 44 ingredients that start"
## [62] "that cigarettes kill every 24 hours.'"
## [63] "executives know it."
## [64] "with the letter \"A\":"
## [65] "The CEOs were not impressed."
## [66] "The hearing marked a turning point in the"
## [67] "of who knows what\" was comical."
## [68] "Acetanisole, acetic acid, acetoin,"
## [69] "\"We have looked at the data."
## [70] "It does"
## [71] "nation's growing aversion to cigarettes. No"
## [72] "The day before the hearing, the tobacco"
## [73] "acetophenone,6-acetoxydihydrotheaspirane,"
## [74] "not convince me that smoking causes death,\""
## [75] "2-acetyl-3-ethylpyrazine, 2-acetyl-5-"
## [76] "said Andrew Tisch of the Lorillard Tobacco"
## [77] "longer hamstrung by tobacco-state seniority"
## [78] "companies released a long-secret list of 599"
## [79] "Co."
## [80] "and the deep-pocketed tobacco lobby,"
## [81] "methylfuran, acetylpyrazine, 2-acetylpyridine,"
## [82] "Congress is taking aim at cigarette makers."
## [83] "additives used in cigarettes. The companies"
## [84] "said all are certified by an \"independent"
## [85] "3-acetylpyridine, 2-acetylthiazole, aconitic"
(You can compare that on your own with the Tesseract results.)
FIN
{cdcfluview} checks are done, and the fixed functions are back on CRAN! Just in time to close out this post.
If you’re on macOS, definitely check out the various ML/AI frameworks Apple has to offer via Swift and have some fun playing with integrating them into R (or build some small, command line utilities if you want to keep Swift and R apart).
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This article is originally published at https://rud.is/b
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